Documentation For New Users : How To Search For Accessions
Documentation for New Users: How to Search for Accessions
Introduction
As we strive to create a seamless experience for new users, it's essential to provide clear documentation on how to search for accessions. This includes information on URLs to search at, the format of search keys, what can be searched and where, and the results available. In this article, we'll guide you through the process of searching for accessions on various platforms, including Grin Global, Genesys PGR, and GenoLink.
Starting from Web Search
When searching for accessions, it's common for new users to start with a web search. Let's take a look at some examples:
- Search for: "agg accession search"
- Finds: https://ausgenebank.agriculture.vic.gov.au/gringlobal/, which is a good starting point, but requires documentation on the search format.
- Search for: "grin-global AGG"
- The first result is https://ausgenebank.agriculture.vic.gov.au/gringlobal/distribution, which does not link to the search page.
- Search for: "AGG genebank passport data"
- The first result is https://data.grdc.com.au/item/6672/dataset/australian-grains-genebank, which has a link to https://agriculture.vic.gov.au/crops-and-horticulture/australian-grains-genebank, but doesn't have an obvious pathway to search.
- Search for: "grin-global"
- The first result is https://www.grin-global.org/, which has a link to the search page on the front page: AGG is not on the map, but APG South Australia is: https://apg.pir.sa.gov.au/gringlobal/search.
- From the top menu: GG-Sites: pull-down menu: (at the top, first entry because alphabetical): Australian Grains Genebank (AGG) -> https://ausgenebank.agriculture.vic.gov.au/gringlobal/search, which is the desired search page.
Search Key Format
When searching for accessions, it's essential to use the correct format. Let's take a look at an example:
- Searching for the Accession ID: AGG28089WHEA2-B00005-11-21
- I found that accession on Grin Global AGG, using List Search, which has a suggested format, which helped; following the examples I searched for AGG 28089 WHEA, OK: https://ausgenebank.agriculture.vic.gov.au/gringlobal/accessiondetail?id=244534
Searching at Grin Global
To search for accessions on Grin Global, follow these steps:
- Go to https://ausgenebank.agriculture.vic.gov.au/gringlobal/search
- Use the List Search feature, which has a suggested format: AGG 28089 WHEA
- Click on the search button to retrieve the results
Searching at Genesys PGR
To search for accessions on Genesys PGR, follow these steps:
- Go to https://www.genesys-pgr.org/
- Navigate to Directory > Data providers to Genesys > Australian Grains Genebank (https://www.genesys-pgr.org/wiews/AUS165 AGG) . Click on "Browse Accessions" to access the search page with added filter AUS165
- Use the Manual Filter feature to add the holding institute (AUS165) and accession (AGG 28089 WHEA) to retrieve the results
Searching at GenoLink
To search for accessions on GenoLink, follow these steps:
- Go to https://genolink.plantinformatics.io/
- Use the search bar to search for a single accession at a time, using just the number (without AGG WHEA, e.g. just 28089)
- Click on the result to download the passport data from Genesys PGR
Conclusion
In this article, we've provided a comprehensive guide on how to search for accessions on various platforms, including Grin Global, Genesys PGR, and GenoLink. By following these steps, new users can easily find the information they need to access the passport data of various accessions. We hope this documentation will help create a smoother experience for new users and provide them with the necessary tools to navigate the search process.
Frequently Asked Questions: Searching for Accessions
Q: What is an accession ID?
A: An accession ID is a unique identifier assigned to a specific plant or organism in a genebank or database. It typically consists of a combination of letters and numbers that provide information about the accession, such as its origin, characteristics, and location.
Q: What is the format of an accession ID?
A: The format of an accession ID varies depending on the database or genebank. However, it typically consists of three parts: the institute code, the accession number, and the collection code. For example, AGG 28089 WHEA is an accession ID that consists of the institute code (AGG), the accession number (28089), and the collection code (WHEA).
Q: How do I search for accessions on Grin Global?
A: To search for accessions on Grin Global, follow these steps:
- Go to https://ausgenebank.agriculture.vic.gov.au/gringlobal/search
- Use the List Search feature, which has a suggested format: AGG 28089 WHEA
- Click on the search button to retrieve the results
Q: How do I search for accessions on Genesys PGR?
A: To search for accessions on Genesys PGR, follow these steps:
- Go to https://www.genesys-pgr.org/
- Navigate to Directory > Data providers to Genesys > Australian Grains Genebank (https://www.genesys-pgr.org/wiews/AUS165 AGG)
- Click on "Browse Accessions" to access the search page with added filter AUS165
- Use the Manual Filter feature to add the holding institute (AUS165) and accession (AGG 28089 WHEA) to retrieve the results
Q: How do I search for accessions on GenoLink?
A: To search for accessions on GenoLink, follow these steps:
- Go to https://genolink.plantinformatics.io/
- Use the search bar to search for a single accession at a time, using just the number (without AGG WHEA, e.g. just 28089)
- Click on the result to download the passport data from Genesys PGR
Q: What is the difference between a search key and an accession ID?
A: A search key is a term or phrase used to search for accessions in a database or genebank. An accession ID, on the other hand, is a unique identifier assigned to a specific plant or organism. While a search key can be used to retrieve a list of accessions that match a specific term or phrase, an accession ID is a unique identifier that can be used to retrieve a specific accession.
Q: Can I search for accessions using multiple search keys?
A: Yes, you can search for accessions using multiple search keys. For example, you can search for accessions that have a specific characteristic, such as "drought tolerance," and also have a specific origin, such as "Australia."
Q: How do I download the passport data for an accession?
A: To download the passport data for an accession, follow these steps:
- Search for the accession using the relevant search key or accession ID
- Click on the result to access the passport
- Use the download feature to save the passport data to your computer
Q: What is the passport data?
A: The passport data is a set of information that describes a specific accession, including its origin, characteristics, and location. It typically includes information such as the accession ID, the institute code, the accession number, the collection code, and the characteristics of the accession.
Q: Can I access the passport data for multiple accessions at once?
A: Yes, you can access the passport data for multiple accessions at once. For example, you can search for a list of accessions that have a specific characteristic, such as "drought tolerance," and then access the passport data for each of those accessions.